I would agree with master cylinder. They would even blow out on guys doing fluid exchanges in the honda garage sometimes. When doing a fluid exchange follow these steps:
1) Bleed the system IN THE CORRECT ORDER! Bleed sequence is NOT always RR, RL, FR, FL. ALWAYS check the bleed sequence for your year car:
94-97 integra: RR-LF-LR-RF
98-01 integra: LF-RF-RR-LR
2) Gently pump the pedal no more than half the distance to the floor. If you start by pressing the pedal all the way to the floor to build pressure you WILL blow the seals in the master cylinder. Do this until you start getting close to your normal pedal resistance
3) Start the car
4) Again gently pump the pedal about half the distance of pedal travel to the floor until you get your desired pedal feel.